Package: geer 0.1.1

geer: Bias-Reduced and Penalized Generalized Estimating Equations

Fits marginal regression models for repeated or clustered responses using generalized estimating equations (GEE). Provides ordinary GEE estimators, bias-reduced and bias-corrected GEE estimators, and Jeffreys-type penalized GEE estimators for binary, count and continuous responses. Methods are described in Touloumis (2026a) <doi:10.48550/arXiv.2606.16043> and Touloumis (2026b) <doi:10.48550/arXiv.2606.16058>.

Authors:Anestis Touloumis [aut, cre]

geer_0.1.1.tar.gz
geer_0.1.1.zip(r-4.7-x86_64)geer_0.1.1.zip(r-4.7-arm64)geer_0.1.1.zip(r-4.6-x86_64)geer_0.1.1.zip(r-4.6-arm64)geer_0.1.1.zip(r-4.5-x86_64)
geer_0.1.1.tgz(r-4.6-x86_64)geer_0.1.1.tgz(r-4.6-arm64)geer_0.1.1.tgz(r-4.5-x86_64)geer_0.1.1.tgz(r-4.5-arm64)
geer_0.1.1.tar.gz(r-4.7-arm64)geer_0.1.1.tar.gz(r-4.7-x86_64)geer_0.1.1.tar.gz(r-4.6-arm64)geer_0.1.1.tar.gz(r-4.6-x86_64)
geer_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
geer/json (API)

# Install 'geer' in R:

install.packages('geer', repos = c('https://anestistouloumis.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/anestistouloumis/geer/issues

Uses libs:

openblas– Optimized BLAS
c++– GNU Standard C++ Library v3

Datasets:

cerebrovascular - Cerebrovascular Deficiency Trial
cholecystectomy - Shoulder Pain After Laparoscopic Cholecystectomy Trial
depression - Postnatal Depression Oestrogen Patch Trial
epilepsy - Progabide Epilepsy Trial
leprosy - Antibiotic Treatment for Leprosy Trial
respiratory - Respiratory Illness Clinical Trial
rinse - Dental Plaque Mouth Rinse Trial

On CRAN:

openblas cpp

3.93 score 3 scripts 366 downloads 14 exports 12 dependencies

Last updated from:e5b1ac9e95. Checks:3 ERROR, 12 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	ERROR	140
linux-devel-x86_64	ERROR	189
source / vignettes	OK	263
linux-release-arm64	OK	180
linux-release-x86_64	OK	225
macos-release-arm64	OK	222
macos-release-x86_64	OK	425
macos-oldrel-arm64	OK	185
macos-oldrel-x86_64	OK	557
windows-devel-arm64	ERROR	407
windows-devel-x86_64	OK	235
windows-release-arm64	OK	461
windows-release-x86_64	OK	236
windows-oldrel-x86_64	OK	251
wasm-release	OK	131

Exports:emm_basis.geer frechet_bounds_cor geecriteria geer_control geewa geewa_binary glance mcar_homoscedasticity_test mcar_little_test mcar_logistic_test recover_data.geer runs_test step_p tidy

Dependencies:brglm2 enrichwith generics lattice MASS Matrix nleqslv nnet numDeriv Rcpp RcppArmadillo statmod

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Bias-Reduced and Penalized Generalized Estimating Equations	geer-package geer
Add or Drop Single Terms to or from a geer Object	add1.geer drop1.geer
ANOVA Tables for geer Objects	anova.geer
Cerebrovascular Deficiency Trial	cerebrovascular
Shoulder Pain After Laparoscopic Cholecystectomy Trial	cholecystectomy
Extract Model Coefficients from a geer Object	coef.geer
Confidence Intervals for Model Parameters from a geer Object	confint.geer
Postnatal Depression Oestrogen Patch Trial	depression
emmeans Support for geer Objects	emmeans-support emm_basis.geer recover_data.geer
Progabide Epilepsy Trial	epilepsy
Extract Model Fitted Values from a geer Object	fitted.geer
Fréchet Bounds for a Working Correlation Matrix	frechet_bounds_cor
Model Selection Criteria for geer Objects	geecriteria
Control Parameters for geer Model Fitting	geer_control
Fitting (Adjusted) Generalized Estimating Equations	geewa
Fitting (Adjusted) Generalized Estimating Equations for Binary Responses	geewa_binary
Glance at a geer Object	glance.geer
Antibiotic Treatment for Leprosy Trial	leprosy
marginaleffects Support for geer Objects	get_coef.geer get_data.geer get_predict.geer get_vcov.geer marginaleffects-support set_coef.geer
Jamshidian-Jalal Test of Missing Completely at Random	mcar_homoscedasticity_test
Little's Test of Missing Completely at Random	mcar_little_test
Logistic Regression Test of Missing Completely at Random	mcar_logistic_test
Construct Design Matrices from a geer Object	model.matrix.geer
Plot the Residual Sign Sequence of a Runs Test	plot.geer_runs_test
Predictions from a geer Object	predict.geer
Print a geer Object	print.geer
Print a summary.geer Object	print.summary.geer
Residuals from a geer Object	residuals.geer
Respiratory Illness Clinical Trial	respiratory
Dental Plaque Mouth Rinse Trial	rinse
Wald-Wolfowitz Runs Test for geer Residuals	runs_test
Stepwise Model Selection by Hypothesis Testing	step_p
Summarize a geer Object	summary.geer
Tidy a geer Object	tidy.geer
Extract Variance-Covariance Matrix from a geer Object	vcov.geer